miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|227768712|gb|FS284152.1|FS284152 ATATGGCTGAAGTGGTATCCCGTTTTCCGTGTTCTCTGAGATTGAGATAAGTAACTGTAGTGGAGTGGAGTGGAGTGGTG
TAGTCAGTCATCAGTCATGTCGTCAATCTCTTCCATTTCGGTTTCAAATGGTCGCTGTTTCAGTTTCAGTCTGGGGGCTG
TGCCGTTCCAAACCAAGAAGCCATTTTCCCAATTGCAATTCCCAAGAAGCAGAGGGAGAGGGGCGATGGTGGTGGCGATG
AGCGTGGAGGCGGGGGTTGGAGTGATGGGCACCAAGTTGGGGATGATGAGCTTCTTCCAACAAGACGGAGTGGTTGTTCC
CGTCACCGTCGTCGGCTTCAAGGAAGGCAACATCGTCACCCAGATCAAGACCCACTCCACCGACGGTTACAGCGCCGTCC
AGGTTGGCTACCAGAGGGTCAGGGACCGCAAACTCACCAAGCCCGAGATGGGTCATCTCCAGAAGGCCGGTGCCATCCCC
ATGCGCCACCTTCAGGAGTTCCGTCTCCAATCCGTTGATGGCTTCGACCCCAACCAGCCCCTCCTCTTCGATGAACTCTT
CAAGGAGGGTGACCTCGTTGATGTCTCCGGCACCACCATCGGCAAGGGTTTCCAAGGTGGTATAAAGCGTCATAACTTCA
AAAGGGGTCCAATGAGCCATGGTTCCAAGAGTCATAGACAACTGGGATCAATTGGTGCTGGAACCACACCTGGGCGTGTA
TAC




Most similar to sp|Q9SKX4|RK3A_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SKX4|RK3A_ARATH 50S ribosomal protein L3-1, chloroplastic
           OS=Arabidopsis thaliana GN=RPL3A PE=1 SV=1
          Length = 271

 Score =  272 bits (696), Expect = 1e-72
 Identities = 129/173 (74%), Positives = 151/173 (87%)
 Frame = +1

Query: 205 RSRGRGAMVVAMSVEAGVGVMGTKLGMMSFFQQDGXXXXXXXXGFKEGNIVTQIKTHSTD 384
           +S  +   VV+ S+EAG+GVMG+KLGMMSFF++DG        GF+EGNIVTQIKT +TD
Sbjct: 39  KSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATD 98

Query: 385 GYSAVQVGYQRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLQSVDGFDPNQPLLFDELFK 564
           GY AVQ+GY+RVRD+KLTKPE GHLQKAG IPMRHLQEFRL +++GF+PNQ L+FDE+FK
Sbjct: 99  GYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFK 158

Query: 565 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVY 723
           EGDLVDV+GTTIGKGFQGGIKRH+FKRG M+HGSKSHR LGSIGAGTTPGRVY
Sbjct: 159 EGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVY 211